Molecular veterinary Microbiology
- Abalone Herpesvirus (dsDNA, Herpesviridae, Simplexvirus): Molecular diagnosis (PCR)
- Acanthamoeba spp. in freshwater or lesions from animals: Molecular diagnosis (PCR); Species molecular identification (sequencing).
- Acanthocheilonema reconditum - Microscopic exam; Molecular diagnosis (PCR).
- Acariosis - (see Snails-Acariosis-Heliciculture-parasitic pathology in snails Riccardoella limacum - Microscopic exam).
- Acheta domesticus Densovirus (AdDNV) (crickets virus) - Insect Parvovirus: Molecular diagnosis (PCR).
- Actinobacillus pleuropneumoniae - Molecular diagnosis (PCR).
- Acute Bee Paralysis virus (ABPV) (+ssRNA, Dicistroviridae, Aparavirus) - Bees: Molecular diagnosis (RT-PCR).
- Aeromonas hydrophila.
- Aeromonas salmonicida(fish furunculosis, Tail-rot).
- African Horse Sickness virus (AHSV) (Reoviridae, Orbivirus) - Molecular diagnosis (RT-PCR).
- African Horse Sickness virus (Reoviridae, Orbivirus): Molecular diagnosis (RT-PCR).
- African swine fever virus (ASFV) (dsDNA, Asfarviridae, Asfivirus): Molecular diagnosis (PCR).
- Akabane virus (-ssRNA, Bunyavirales, Peribunyaviridae, Orthobunyavirus): Molecular diagnosis (RT-PCR).
- Alcephaline Herpesvirus (See: Bovine Herpesvirus; Malignant Catarrhal fever).
- American Foulbrood (AFB) of bee: Paenibacillus larvae - Molecular diagnosis (PCR).
- Amoebic Gill Disease (AGD) (Salmo salar, - Atlantic Salmon -)
- Anaplasma bovis - Microscopic exam; Molecular diagnosis (PCR).
- Anaplasma phagocytophilum - Molecular diagnosis (PCR).
- Anaplasma platys - Molecular diagnosis (PCR).
- Anaplasma spp.: Molecular diagnosis (PCR); Species molecular identification (sequencing)..
- Anaplasmosis (Anaplasma bovis, A.centrale, A.marginale, A.phagocytophilum, A. platys) (see each species).
- Ancylostoma spp. (A. caninum, A. braziliense, A. ceylanicum, A. tubaeforme): Microscopic exam; Molecular diagnosis (PCR).
- Angiostrongylus vasorum and Angiostrongylus cantonensis: Molecular diagnosis (PCR).
- Angullicola crassus (Angullicoides crassus) - Molecular diagnosis (PCR); Molecular identification (sequencing).
- Animal species in meat or animal proteins in food or feed: Molecular identification (sequencing).
- Anisakis spp. - Macroscopic and microscopic exam; Molecular identification of species (see Anisakis spp. in the Clinical Microbiology Area).
- Anncaliia brachiola (Microsporidia): Molecular diagnosis (PCR).
- Anthrax (see Bacillus anthracis).
- Aphthous fever (Foot-and-Mouth disease -FMD-) (+ssRNA, Picornavirales, Picornaviridae, Aphthovirus): see Foot-and-Mouth disease.
- Apicystis bombi: Molecular diagnosis (PCR).
- Archaea): Culture; Molecular identification (sequencing).
- Arcobacter spp. - (see in the Clinical Microbiology Area: Human and animal pathology interest and in contamination sources -water and food from animal origin-).
- Arenavirus (-ssRNA, Arenaviridae): Molecular diagnosis (RT-PCR).
- Arthropods: Molecular identification (sequencing).
- Ascosphaera spp., Ascosphaera apis: Molecular diagnosis (PCR).
- Astrovirus (see Astrovirus in the Clinical Microbiology Area).
- Atlantic Salmon (Salmo salar L.): Infectious diseases - Molecular diagnosis (PCR, RT-PCR and Nucleic Acid sequencing).
- Aujeszky disease (Ver - Suid Herpesvirus type 1; Pseudorabies; Aujeszky disease): Molecular diagnosis (PCR).
- Avian Adenovirus group 3 (Egg Drop Syndrome) (dsDNA, Adenoviridae, Adenovirus, Fowl Adenovirus A): Molecular diagnosis (PCR).
- Avian Adenovirus type 1 (Fowl Adenovirus 1) (FAD1= Celo virus): Molecular diagnosis (PCR).
- Avian Bornavirus: Molecular diagnosis (RT-PCR).
- Avian Encephalomyelitis (+ssRNA, Picornaviridae): Molecular diagnosis (RT-PCR).
- Avian Flu - (see Influenza A).
- Avian Hemoparasites (Plasmodium spp., Leucozytozoon spp., Haemoproteus spp.)>: Molecular diagnosis (PCR).
- Avian Infectious Bronchitis (Coronaviridae, Gammacoronavirus) - Molecular diagnosis (RT-PCR).
- Avian Infectious Bronchitis Coronavirus (IBV)
- Avian Infectious bursal (AIB) (IBDV: Infectious Bursal Disease virus), Gumboro´s Disease - Molecular diagnosis (RT-PCR).
- Avian Infectious Bursitis (Gumboro´s disease) - (see Infectious bursal disease virus; Gumboro disease).
- Avian Influenza - (see Influenza A).
- Avian Leucosis virus (subgroups A-E y J): Molecular diagnosis (RT-PCR).
- Avian leukosis virus (ALV).
- Avian Leukosis virus - Molecular diagnosis (RT-PCR).
- Avian metapneumovirus and other species - Molecular diagnosis (RT-PCR).
- Avian mycoplasmosis (Mycoplasma gallisepticum, Mycoplasma synoviae, Mycoplasma iowae) - Molecular diagnosis (PCR).
- Avian Nephritis virus (+ssRNA, Astroviridae, Avastrovirus): Molecular diagnosis (RT-PCR).
- Avian Orthoreovirus - Molecular diagnosis (RT-PCR).
- Avian Paramyxovirus types 1 to 11: Molecular diagnosis (RT-PCR).
- Avian Parvovirus (chicken, turkeys, ducks, ...) (ssDNA with + and - strands, Parvoviridae, Parvovirinae, Aveparvovirus): Molecular diagnosis (PCR).
- Avian Pneumovirus (APV) (-ssRNA, Paramyxoviridae, Pneumovirinae, Metapneumovirus): Molecular diagnosis (RT-PCR).
- Avian Pneumovirus (APV) (-ssRNA, Paramyxoviridae, Pneumovirinae, Metapneumovirus): Molecular diagnosis (RT-PCR).
- Avian Poxvirus - (see Avipoxvirus).
- Avian Reovirus (dsRNA, Reoviridae, Orthoreovirus, Avian Orthoreovirus): Molecular diagnosis (RT-PCR). - Molecular diagnosis (RT-PCR).
- Avian Reticuloendotheliosis virus (Reoviridae, Orthoretrovirinae, Gammaretrovirus): Molecular diagnosis (RT-PCR).
- Avian Rotavirus aviar: Molecular diagnosis (RT-PCR).
- Avian trichomoniasis - Trichomonas gallinae y Tetratrichomonas gallinarum: Culture; Molecular diagnosis (PCR and sequencing).
- Avian tuberculosis: see Mycobacterium avium subsp. paratuberculosis.
- Avibacterium paragallinarum (syn. Haemophilus paragallinarum) – Avian infectious coryza: Molecular diagnosis (PCR).
- Avipoxvirus: Fowl Poxvirus (FWPV), Canary Poxvirus (CNPV), Pigeonpox, Quailpox or other Avipoxvirus - Molecular diagnosis (PCR); Identification of strain / species (sequencing).
- Equine Hepacivirus (EqHV) (+ssRNA; Flaviviridae, Hepacivirus, Hepacivirus A (syn. Canine hepacivirus, Equine hepacivirus, non-primate hepacivirus): Molecular diagnosis (RT-PCR).
- Perkinsus marinus and Perkinsus olseni: Molecular detection (PCR).
- Porcine Coronavirus - Molecular diagnosis (RT-PCR).
- Babesia caballi: Molecular diagnosis (PCR).
- Babesia canis (B. canis subsp. canis, B. canis subsp. vogeli, B. canis subsp. rossi): Microscopic exam; Molecular diagnosis (PCR).
- Babesia divergens - Microscopic exam; Molecular diagnosis (PCR).
- Babesia gibsoni - Microscopic exam; Molecular diagnosis (PCR).
- Babesiosis (Babesia bigemina, B. bovis, B.caballi, B.canis canis, B.canis vogeli, B.canis rossi, B.equi, B.felis, B.gibsoni, B. major, B.motasi , B.ovis, B.perroncitoi, B.trautmanni) - Molecular diagnosis (PCR); Species identification (P
- Bacillus anthracis (Anthrax): Isolation in culture; Molecular identification (sequencing).
- Bacterial Kidney disease of fishes: see Renibacterium salmoninarum.
- Bagaza Virus (+ssRNA, Arbovirus, Flaviviridae, Flavivirus) - Molecular diagnosis (RT-PCR).
- Balamuthia mandrillaris in freshwater or lesions from animals: Molecular diagnosis (PCR).
- Bartonella bovis - Microscopic exam; Molecular diagnosis (PCR).
- Bartonella clarridgeiae - Molecular diagnosis (PCR).
- Bartonella henselae - Molecular diagnosis (PCR).
- Bartonella koehlerae: Molecular diagnosis (PCR).
- Bartonella quintana: Molecular diagnosis (PCR).
- Bartonella spp.: Molecular diagnosis (Real-time PCR); Species molecular identification (sequencing).
- Bartonella vinsonii subsp. arupensis and B. vinsonii subsp. berkhoffii: Molecular diagnosis (PCR).
- Bee Nosemosis (Microsporidia - Nosema apis, Nosema bombi, Nosema ceranae): Molecular diagnosis (PCR).
- Bifidobacterium longum subsp. longum and B. longum subsp. infantis: Molecular diagnosis (PCR).
- Birds, identificación of species: Molecular identification (PCR and sequencing).
- Birnaviruses (Solea senegalensis - Sole -)
- Black Queen Cell virus (BQCV) (+ssRNA, Picornavirales, Dicistroviridae, Triatovirus): Molecular diagnosis (RT-PCR).
- Bluetongue virus (dsRNA, Reoviridae, Orbivirus): Molecular diagnosis (RT-PCR).
- Bonamia ostreae and Bonamia exitiosa: Molecular detection (PCR).
- Border Disease Virus (Flaviviridae, Pestivirus) (Border disease virus) - Molecular diagnosis (RT-PCR).
- Bordetella avium - Molecular diagnosis (PCR).
- Bordetella bronchiseptica - Culture; Molecular diagnosis (PCR).
- Borrelia burgdorferi sensu lato (Borrelia burgdorferi sensu stricto, B. garinii, B. afzelii, B. lusitaniae and other species): IgM and IgG antibodies; Molecular diagnosis (PCR); Molecular species identificacion (sequencing).
- Borrelia spp.: Molecular diagnosis (PCR); Species molecular identification (sequencing).
- Botulism - Clostridium botulinum (see Clostridium botulinum tests in the specific Clostridium botulinum Area).
- Bovine adenoviruses - Molecular diagnosis (PCR).
- Bovine and feline Trichomonosis - (see Tritrichomonas fetus: Microscopic exam; Molecular diagnosis (PCR).
- Bovine Coronavirus (+ssRNA,Coronaviridae): Molecular diagnosis (RT-PCR).
- Bovine Enterovirus: Molecular diagnosis (RT-PCR).
- Bovine Ephemeral fever virus (BEFV) (-ssRNA, Rhabdoviridae, Ephemerovirus, Kotonkon virus (KOTV); Adelaide River virus (ARV), Berrimah virus (BRMV), Kimberley virus (KIMV): Molecular diagnosis (RT-PCR).
- Bovine Herpesvirus (Malignant Catarrhal Fever) (I, dsDNA, Herpesviridae, Gammaherpesvirinae, Macavirus, species Alcelaphine gammaherpesvirus 1 (AIHV-1) and Ovine gammaherpesvirus 2 (OHV-2) - Molecular diagnosis (PCR).
- Bovine Herpesvirus type 1: Infectiuos bovine rhinotracheitis (Herpesviridae, Varicellovirus) - Molecular diagnosis (PCR).
- Bovine herpesvirus type 2 (BHV2).
- Bovine Herpesvirus type 2 (Herpesviridae, Simplexvirus) - Molecular diagnosis (PCR).
- Bovine Herpesvirus type 5 (Herpesviridae, Varicellovirus) - Molecular diagnosis (PCR).
- Bovine Leukemia virus (ssRNA, Retroviridae, Orthoretrovirinae, Deltaretrovirus): Molecular diagnosis (RT-PCR).
- Bovine Norovirus.
- Bovine Papilloma (dsDNA, Papillomaviridae, Deltapapillomavirus, Fibropapillomavirus BPV-1, BPV-2; Epsilopapillomavirus BPV-5; Xipapapillomavirus -epitheliotropic BPVs-, BPV-3, BPV-4, BPV-6: Molecular diagnosis (PCR and sequenci
- Bovine Papillomavirus: Molecular diagnosis (PCR).
- Bovine Papular Stomatitis Virus (BPSV) (Parapoxvirus y Pseudocowpoxvirus): Molecular diagnosis (PCR).
- Bovine Parainfluenza type 3 (PI3) (presently Bovine Respirovirus 3) (-ssRNA, Paramyxoviridae, Respirovirus): Molecular diagnosis (RT-PCR).
- Bovine Parainfluenza virus: Molecular diagnosis (RT-PCR).
- Bovine Parvovirus (BPV) (Hemadsorbing Enteric virus) (ssDNA, Parvoviridae, Parvovirinae, Parvovirus, Subspecies BPV-1, -2, -3) - Molecular diagnosis (PCR).
- Bovine Piroplasmas - (see Babesiosis).
- Bovine Polyoma (dsDNA, Polyomaviridae, Alpha-, Beta-, Gamma and Deltapolyomavirus, presently Orthopolyomavirus, type SV40; Wukipolyomavirus, type KI polyomavirus; Avipolyomavirus, type Avian Polyomavirus): Molecular d
- Bovine Polyomavirus: Molecular diagnosis (PCR).
- Bovine Pseudocowpox virus (Milker´s nodule) (dsDNA, Poxviridae, Parapoxvirus, Pseudocowpox virus): Molecular diagnosis (PCR).
- Bovine Pseudocowpoxvirus: Molecular diagnosis (PCR).
- Bovine Reovirus (Reo: respiratory enteric orphan viruses) (dsRNA, Reoviridae, Spinareovirinae, Orthoreovirus, Mammalian Orthreovirus): Molecular diagnosis (RT-PCR).
- Bovine Respiratory Syncytial (-ssRNA, Pneumoviridae, Orthopneumovirus, Bovine Respiratory Syncytial virus): Molecular diagnosis (RT-PCR).
- Bovine Rhinovirus (+ssRNA, Picornaviridae, Enterovirus, Rhinovirus A, B and C): Molecular diagnosis (RT-PCR).
- Bovine Rotavirus (dsRNA, Reoviridae, Seudoreovirinae, Rotavirus, Rotavirus A to I): Molecular diagnosis (RT-PCR).
- Bovine Spongiform Encephalopathy (BSE). Glial Fibrillary Acid Protein (GFAP): Molecular detection in samples of food derivatives, etc.
- Brain protein GFAP (Glial Fibrillary Acid Protein): Detection in animals brain, feed, food.
- Branchiomyces spp.-Branchiomycosis (Branchiomyces sanguinis y Branchiomyces demigrans):: Isolation in culture; Molecular identification (sequencing).
- Bronchothrix thermosphacta in meat and fishes spoliage: Qualitative or quantitatice culture; Molecular diagnosis (PCR).
- Brucella abortus - Molecular diagnosis (PCR).
- Brucella canis - Molecular diagnosis (PCR).
- Brucella melitensis - Molecular diagnosis (PCR).
- Brucella ovis - Molecular diagnosis and identification (PCR and sequencing).
- Brucella spp.: Interest in human and animal pathology and food contamination - Culture; Antibodies; Molecular diagnosis (PCR).
- Brucella suis - Molecular diagnosis (PCR).
- Bovine Viral diarrhea (BVD) - Molecular diagnosis (RT-PCR)..
- Cache Valley virus (Arbovirus, Peribunyaviridae, Orthobunyavirus) - Molecular diagnosis (RT-PCR).
- Campylobacter spp.( Campylobacter coli, Campylobacter jejuni, Campylobacter lari - Culture; Molecular diagnosis (PCR).
- Canarypoxvirus (CNPV) - (see Avipoxvirus).
- Canine adenovirus type 1 (dsDNA, Adenoviridae): Molecular diagnosis (PCR).
- Canine Adenovirus type 2 (dsDNA, Adenoviridae) - Molecular diagnosis (PCR).
- Canine Coronavirus (CCoV): Molecular diagnosis (RT-PCR).
- Canine Distemper virus (CDV): (see Distemper virus)
- Canine Haemoplasmas (Haemotropic Mycoplasmas).
- Canine Herpesvirus: Molecular diagnosis (PCR).
- Canine Herpesvirus type 1 (Herpesviridae, Varicellovirus) - Molecular diagnosis (PCR).
- Canine Influenza virus (CIV) (H1N1, cH3N2, cH3N8): Molecular diagnosis (RT-PCR).
- Canine Oral Papilloma (dsDNA, Papillomaviridae) - Molecular diagnosis (PCR).
- Canine Oral Papillomavirus: Molecular diagnosis (PCR).
- Canine Parainfluenza virus: Molecular diagnosis (RT-PCR).
- Canine Parvovirus (CPV) (ssDNA, Parvoviridae, Parvovirinae, Parvovirus) - Molecular diagnosis (PCR).
- Caprine Adenovirus (Mastadenovirus and Atadenovirus): Molecular diagnosis (PCR).
- Caprine and ovine Ecthyma contagiosum (Parapoxvirus) - Molecular diagnosis (PCR).
- Caprine Arthritis Encephalitis virus –CAEV-) and MAEDI-VISNA - Lentivirus: Molecular diagnosis (RT-PCR).
- Caprine Arthritis Encephalitis virus (CAEV) (Retroviridae, Lentivirus): Molecular diagnosis (RT-PCR).
- Caprine Herpesvirus type 1) (Herpesviridae, Varicellovirus): Molecular diagnosis (PCR).
- Caprine pustule virus (Capripox virus) - (see Poxvirus transmitted by animals).
- Capripoxvirus - (see Poxvirus transmitted by animals).
- Carnimonas nigrificans and other microorganisms of brown or black spots in fresh or cured meat products (hams, loins, pepperoni, sausage, ...) - Culture; Molecular diagnosis (PCR).
- Carnobacterium spp.<7B>: Molecular diagnosis (PCR); Molecular identification of species (sequencing); Isolation in culture; Molecular identification of culture.
- Carp virus (Spring viraemia).
- Chicken Anemia virus (ssDNA, Circoviridae, Gyrovirus): Molecular diagnosis (PCR)
- Chlamydia ovis (previously Chlamydia psittaci ovis): Molecular diagnosis (PCR).
- Chlamydophila abortus - Molecular diagnosis (PCR).
- Chlamydophila caviae.
- Chlamydophila felis - Molecular diagnosis (PCR).
- Chlamydophila pecorum.
- Chlamydophila pneumoniae - Molecular diagnosis (PCR).
- Chlamydophila psittaci - (see Chlamydophila psittaci in the Clinical Microbiology area).
- Chronic and acute bee paralisis virus (CBPV y ABPV): Molecular diagnosis (RT-PCR).
- Chronic Bee Paralysis virus (CBPV) (Bees) (+ssRNA): Molecular diagnosis (RT-PCR).
- Classical swine fever (Hog cholera, Border disease) (BVD) (Flaviviridae, Pestivirus): Molecular diagnosis (RT-PCR).
- Classical Swine Fever virus (CSFV) (Hog cholera Virus) (Flaviviridae, Pestivirus) - Molecular diagnosis (RT-PCR).
- Claviceps purpurea (Ergotism, Ergot) - (see Ergotism).
- Clostridium botulinum - (see Clostridium botulinum testing in the specific test Area).
- Clostridium novyi types A, B and C: Culture; Molecular diagnosis (PCR and sequencing).
- Clostridium perfringens (see Clostridium perfringens in the Clinical Microbiology Area).
- Clostridium tetani - Toxin detection (experimental inoculation and neutralization test); IgG antidodies; Molecular diagnosis (PCR and sequencing).
- Clostridium tyrobutiricum and related species (Clostridium acetobutyricum, Clostridium beijerinckii, Clostridium butyricum, Clostridium sporogenes, Clostridium tyrobutiricum): Molecular diagnosis (PCR).
- Coccidiosis (chickens) - (see Eimeria spp.).
- Contagious Ecthyma; Pustular Dermatitis; Ecthyma contagiosum (Parapoxvirus) - Molecular diagnosis (PCR).
- Contagious Pustular Dermatitis; Ecthyma contagiosum (Parapoxvirus) - Molecular diagnosis (PCR).
- Corbicula fluminea: Molecular diagnosis (PCR); Molecular identification (sequencing).
- Cowpox (CPXV) - (see Poxvirus transmitted by animals).
- Coxiella burnetii in food: Molecular diagnosis (PCR and sequencing).
- Coxiella burnetii (Q fever) - Molecular diagnosis (PCR) (See Coxiella burnetii in the Clinical Microbiology Area).
- Crithidia bombi: Molecular diagnosis (PCR).
- Cryptobiosis (Cryptobia salmositica): Molecular diagnosis (PCR).
- Cryptosporidium parvum.
- Cryptosporidium spp. - Microscopic exam; Molecular diagnosis (PCR).
- Cyanobacteria (Anatoxin, Cylindrospermopsin -CYN/CYL-, Microcystin, Saxitoxin): Molecular diagnosis (PCR).
- Cyprinid Herpesvirus 2 (CyHV-2) (Goldfish).
- Cyprinid herpesvirus 3 (CyHV-3).
- Cystoisospora belli, Cystoisospora canis, Cystoisospora felis: Molecular diagnosis (PCR).
- Deformed Wing virus (DWV) (Bees) (+ssRNA, Ifaviridae, Iflavirus): Molecular diagnosis (RT-PCR).
- Dermatophilus congolensis (Dermatophilosis): Molecular diagnosis (PCR).
- Dirofilaria repens.
- Distemper virus (Canine Distemper virus -CDV-) (Morbillivirus).
- Distemper virus in humans: Molecular diagnosis (RT-PCR and sequencing).
- Duck hepatitis A virus 1 (DHAV-1) (+ssRNA, Picornavirales, Picornaviridae, Avihepatovirus, Avihepatovirus A, Duck hepatitis virus I, Ia, II, III): Molecular diagnosis (RT-PCR); Molecular identification (sequencing).
- Duck hepatitis B virus (DHBV) (dsDNA, Blubervirales, Hepadnaviridae, Avihepadnavirus, Duck Hepatitis B virus): Molecular diagnosis (PCR); Molecular identification (sequencing).
- DWV-A and DWV-B (Deformed Wing virus A and B): Molecular diagnosis (RT-PCR).
- Enzootic Bovine Leukosis (EBL).
- Ecthyma contagiosum (Parapoxvirus) - Molecular diagnosis (PCR).
- Egg Drop Syndrome: see avian Adenovirus group 3.
- Egg Drop virus syndrome - Molecular diagnosis (PCR).
- Ehrlichia canis - Microscopic exam; Molecular diagnosis (PCR).
- Ehrlichia chaffeensis - Microscopic exam; Molecular diagnosis (PCR).
- Ehrlichia ewingii - Microscopic exam; Molecular diagnosis (PCR).
- Ehrlichia risticii (currently Neorickettsia risticii) - Microscopic exam; Molecular diagnosis (PCR).
- Ehrlichia spp.: Molecular diagnosis (PCR); Species molecular identification (sequencing).
- Eimeria acervulina, Eimeria brunetti, Eimeria mitis, Eimeria maxima, Eimeria necathrix, Eimeria praecox, Eimeria tenella: Molecular diagnosis (PCR).
- Encephalitozoon cuniculi (Encephalitozoonosis): Molecular diagnosis (PCR).
- Endogenous Retrovirus: Molecular diagnosis (reverse transcription for reverse transcriptase presence with BMV or TMV genome).
- Entamoeba coli in water or lesions from animals: Molecular diagnosis (PCR).
- Entamoeba histolytica in water or lesions from animals: Molecular diagnosis (PCR).
- Enterocytozoon bieneusi (Microsporidiosis): Molecular diagnosis (PCR).
- Enterospora nucleophila, Enterospora canceri (Microsporidia): Molecular diagnosis (PCR).
- Enterotoxigenic Escherichia coli.
- Enterovirus of several animal species.
- Epitheliocystis in fishes (Clavochlamydia salmonicola, Piscichlamydia salmonis, Piscirickettsia salmonis): Molecular diagnosis (PCR).
- Epitheliotropic Disease virus (EEDV) (Salvelinus naruaycush - Lake trout -).
- Epizootic Haemorrhagic disease virus (dsRNA -10 segments-, Reovirales, Reoviridae, Orbivirus): Molecular diagnosis (RT-PCR).
- Epizootic Hematopoietic Necrosis virus (EHNV): Molecular diagnosis.
- Epizootic Hemorrhage Disease virus - Molecular diagnosis (RT-PCR).
- Equine adenoviruses (EAdV), types 1 and 2 (dsDNA, Adenoviridae): Molecular diagnosis (PCR).
- Equine Herpesvirus type 1 (Herpesviridae, Varicellovirus) - Molecular diagnosis (PCR).
- Equine Herpesvirus type 3 (Herpesviridae, Varicellovirus) - Molecular diagnosis (PCR).
- Equine Herpesvirus type 4 (dsDNA, Herpesviridae, Varicellovirus): Molecular diagnosis (PCR).
- Equine Herpesvirus type 8 (Herpesviridae, Varicellovirus) - Molecular diagnosis (PCR).
- Equine Herpesvirus type 9 (Herpesviridae, Varicellovirus) - Molecular diagnosis (PCR).
- Equine Influenza virus H3N8: Molecular diagnosis (RT-PCR).
- Equine Parvovirus hepatitis (EqPV-H) (ssDNA; Parvoviridae; Parvovirinae; Copiparvovirus): Molecular diagnosis (PCR).
- Equine Rhinopneumonitis (Equine Herpesvirus types 1 or 4; EHV-1; EHV-4) (Herpesviridae; Alphaherpesvirinae; Varicellovirus) - Molecular diagnosis (PCR).
- Equine viral arteritis (+ssRNA, Arteriviridae, Equarterivirus): Molecular diagnosis (RT-PCR).
- Ergotism (Claviceps purpurea, Ergot) - Molecular diagnosis (PCR and sequencing)
- Erysipelothrix rhusiopathiae: Culture; Molecular diagnosis (PCR); Strain comparison by MLST.
- Erysipelothrix rhusiopathiae (see Erysipelothrix rhusiopathiae in the Clinical Microbiology Area).
- Escherichia coli O157: H7 (stx-1 and stx-2 toxins).
- European Foulbrood of bees: Melissococcus plutonius - Molecular diagnosis (PCR).
- European X virus.
- Falcons: Main infections - Microbiological diagnosis.
- Feline Calicivirus (FCV): Molecular diagnosis (RT-PCR).
- Feline Coronavirus: Molecular diagnosis (RT-PCR).
- Feline Haemoplasmas (Haemotropic Mycoplasma).
- Feline Herpesvirus type 1 (Herpesviridae, Varicellovirus): Molecular diagnosis (PCR).
- Feline Immunodeficiency virus.
- Feline Infectious Peritonitis -FIP- (Feline enteric Coronavirus variant) - Molecular diagnosis (RT-PCR).
- Feline leprosy (Mycobacterium lepraemurium, M. lepraefelis, M. avium, M. malmoense, M. mucogenicum, ...,): Mycobacterium spp. molecular diagnosis (PCR); Species molecular identification (sequencing).
- Feline Leukemia virus.
- Feline Panleukopenia Parvovirus.
- Fish Cardiac and musculoskeletal inflammation (Piscine Orthoreovirus) (dsRNA, Reoviridae, Orthoreovirus): Molecular diagnosis (RT-PCR).
- Fish furunculosis (Tail-rot): see Aeromonas salmonicida.
- Fish Ichthyophonosis (Ichthyophonus hoferi): Molecular diagnosis (PCR).
- Fish Ichtyobodosis (Ichthyobodo necator and Ichthyobodo salmonis): Molecular diagnosis (PCR).
- Fish Pasteurellosis: see Photobacterium damselae subsp. piscicida and Photobacterium damsela subsp. damselae.
- Fish Photobacteriosis: see Photobacterium damselae subsp. piscicida and Photobacterium damselae subsp. damselae.
- Fish species - Molecular identification of species.
- Fishes, species detection an identification in foods: Molecular diagnosis (PCR and sequencing).
- Flavivirus, Arbovirus: Molecular diagnosis (RT-PCR).
- Flavobacterium columnare (previously Flexibacter columnaris) (Columnaris disease): Molecular diagnosis (PCR).
- Flavobacterium psychrophilum: Molecular diagnosis (PCR).
- Flexibacter maritimus
- Foot-and-Mouth disease (FMD, Aphthous fever) (+ssRNA, Picornavirales, Picornaviridae, Aphthovirus): Molecular diagnosis (RT-PCR).
- Fowl Adenovirus (FAV): Molecular diagnosis (PCR).
- Fowlpox virus (FWPV) - (see Avipoxvirus).
- Francisella tularensis, Francisella noatunensis subsp. noatunensis and Francisella noatunensis subsp. orientalis - Culture; Molecular diagnosis (PCR).
- Geobacillus spp.: Quantitative culture; Molecular identification (sequencing).
- Gill Necrosis virus (Ictalurus punctatus, -Catfish, Gill Disease-)
- Glasser´s disease - (see Haemophilus parasuis).
- Gnathostoma spp. (Gnathosthoma spinigerum, Gnathostoma binucleatum, Gnathostoma turgidum, Gnathostoma procyonis and Gnathostoma nipponicum): Identificación molecular (secuenciación).
- Goose hemorrhagic Polyomavirus (GHPV) (dsDNA, Sepolyvirales, Polyomaviridae, Avipolyomavirus, Avian polyomavirus): Molecular diagnosis (PCR); Molecular identification (sequencing).
- Goose Parvovirus (GPV) - Molecular diagnosis (PCR).
- Gumboro virus disease - (see infectious bursal disease, Avian Infectious Bursitis -AIB-).
- Gyrodactilus salaris and Nanophyetus salmonicola in fishes (Platyhelminthes): Molecular diagnosis (PCR).
- Haematopoietic necrosis virus (CyHV-2) (Goldfish)
- Haemophilus paragallinarum: see Avibacterium paragallinarum.
- Haemophilus parasuis (Glasser disease) - Culture; Molecular diagnosis; Molecular typing of serovars-serotypes by sequencing.
- Haemophilus somnus (currently Histophilus somni): see Histophilus somni.
- Halotolerant bacteria: Qualitative and/or quantitative culture; Species molecular identification (sequencing).
- Heartworm - (see Dirofilaria immitis).
- Hematopoietic Necrosis virus - (see Infectious hematopoietic necrosis virus).
- Hepatitis E virus - (see Hepatitis E virus in the Clinical Microbiology Area).
- Hepatospora spp., Hepatospora eriocheir (Microsporidia): Molecular diagnosis (PCR); Species molecular identification (sequencing).
- Hepatozoon americanus (Canine American Hepatozoonosis) - Microscopic exam; Molecular diagnosis (PCR).
- Hepatozoon canis (Canine Hepatozoonosis) - Microscopic exam; Molecular diagnosis (PCR).
- Hepatozoon felis - Microscopic exam; Molecular diagnosis (PCR).
- Histomonas meleagridis (Histomonosis or histomoniasis) - Molecular diagnosis (PCR).
- Histophilus somni (previously Haemophilus somnus): Molecular diagnosis (PCR).
- Hookworm: Ancylostoma spp. (A. caninum, A. tubaeforme, A. braziliense, A. ceylanicum.) - (see Ancylostoma spp.).
- Ictularid Herpesvirus-2 (IcHV-2) (Goldfish).
- Infections transmitted from companion animals (pets) (dogs and cats) to people, including children.
- Infectious Bovine Rhinotracheitis (Bovine Herpesvirus 1) - Vaccine strains with glycoprotein E deletion: see Bovine Infectious Rinotracheitis.
- Infectious Bovine Rhinotracheitis (IBR) (dsDNA, Herpesvirales, Herpesviridae, Varicellovirus, Bovine Herpesvirus 1 -BHV-1): Molecular diagnosis (PCR); Diagnosis of vaccine live strains with gE deletion (sequencing).
- Infectious Bovine Rhinotracheitis (IBR) (dsDNA, Herpesvirales, Herpesviridae, Varicellovirus, Bovine Herpesvirus 1 -BHV-1): Molecular diagnosis (PCR), Vaccine live strains with gE deletion (gE = U58) (sequencing).
- Infectious Bursal Disease virus (Gumboro Disease Virus) - (see Avian Infectious Bursitis -AIB-).
- Infectious hematopoietic necrosis virus (IHNV) (Atlantic salmon)
- Infectious Hematopoietic Necrosis virus of fishes (IHNV)(-ssRNA, Rhabdoviridae, Novirhabdovirus): Molecular diagnosis (RT-PCR).
- Infectious hypodermal and hematopoietic necrosis virus (IHHNV): Diagnóstico molecular (PCR).
- Infectious hypodermal and hematopoietic necrosis virus (IHHNV): Diagnóstico molecular (PCR).
- Infectious Hypodermal and Hematopoietic Necrosis virus (IHHNV) (ssDNA, Parvoviridae, Hamaparvovirinae, Penstylhamaparvovirus): Molecular diagnosis (PCR).
- Infectious Laryngotracheitis virus (dsDNA, Herpesviridae, Alphaherpesvirinae, Iltovirus, Galid Herpesvirus 1) (GalHV1): Molecular diagnosis (PCR).
- Infectious Myonecrosis virus (IMNV) (dsRNA, Totiviridae, Totivirus): Molecular diagnosis (RT-PCR).
- Infectious Myonecrosis virus (IMNV) (Paenid Shrimp Myonecrosis virus) (PsIMNV) (dsRNA, Totaviridae, Totivirus): Molecular diagnosis (RT-PCR).
- Infectious Pancreatic Necrosis Virus of fishes (IPNV) (dsDNA, Birnaviridae, Aquabirnavirus): Molecular diagnosis (RT-PCR)..
- Infectious Pustular Vulvovaginitis (IPV) (Bovine Herpesvirus type 1) (Herpesviridae; Alphaherpesvirinae; Varicellovirus) - Molecular diagnosis (PCR).
- Infectious Salmon Anemia virus (ISA) (Salmo salar -Atlantic Salmon) (-ssRNA, Orthomyxoviridae, Isavirus): Molecular diagnosis (RT-PCR).
- Infectious Spleen and Kidney Necrosis virus (ISKNV).
- Influenza A (all types: H1N1, H5N1, H5N2, H7N1, etc.) -Molecular diagnosis and typing (RT-PCR and sequencing).
- Insect, identification of species: Microscopic exam; Molecular diagnosis (PCR and sequencing).
- Interstitial Nephritis carp virus
- Intestinal Adenomatous Hyperplasia (see Lawsonia intracellularis).
- Iridoviruses (See Linfocistosis; LCDV: Lymphocystis disease virus).
- Israeli Acute Paralysis virus (IAPV) (+ssRNA, Picornavirales, Discistroviridae, Aparavirus): Molecular diagnosis (RT-PCR).
- Jena virus (Norwalk-like) (+ssRNA, Caliciviridae, Norovirus): Molecular diagnosis (RT-PCR).
- Johne´s Disease - (see Mycobacterium avium subsp. paratuberculosis -MAP-).
- Kashmir Bee virus (KBV) (bees) (+ssRNA, Picornavirales, Dicistroviridae, Aparavirus): Molecular diagnosis (RT-PCR).
- Kluyveromyces marxianus: Molecular diagnosis (PCR).
- Koi Herpesvirus
- Kudoa spp. (Myxozoa, Multivalvulida, Kudoidae): Molecular diagnosis (PCR); Molecular identification of species (sequencing).
- Lacticaseibacillus rhamnosus: Molecular diagnosis (PCR).
- Lactococcus lactis: Molecular diagnosis (PCR).
- Largemouth Bass virus.
- Lawsonia intracellularis - Molecular diagnosis (PCR).
- Leishmania spp. - (see Leishmania spp. in the Clinical Microbiology Area).
- Leporid Herpesvirus 4 (Herpesviridae, Simplexvirus) - Molecular diagnosis (PCR).
- Leporid Herpesvirus type 2 - Molecular diagnosis (PCR).
- Leptospira spp. - Culture; Antibodies by microagglutination; Molecular diagnosis (PCR); Molecular identification of serovars (sequencing) (See Leptospira spp. in the Clinical Microbiology Area).
- Listeria monocytogenes - Molecular serotyping of seven major serotypes 1/2a, 1/2b, 1/2c, 3a, 3b, 3c and 4b.
- Louping ill virus (LIV) (Flaviviridae, Flavivirus) - Molecular diagnosis (RT-PCR).
- Lumpy Skin Disease: (See Nodular Contagiosus Dermatitis).
- Lyme Disease - (see Borrelia burgdorferi sensu stricto and Borrelia burgdorferi sensu lato).
- Lymphocystis Disease Virus - (see Lymphocystosis).
- Lymphocystosis (Lymphocystis Disease virus -LCDV-): Molecular diagnosis (PCR).
- Lymphocytic choriomeningitis virus (LCMV) (Arenaviridae, Mammarenavirus) - Molecular diagnosis (PCR).
- Macrobranchium rosenbergii Nodavirus (MrNV) (White Tail Disease -WTD-) (+ssRNA, Nodaviridae, Gammanodavirus): Molecular diagnosis (RT-PCR).
- Maedi-Visna virus (Retroviridae, Lentivirus): Molecular diagnosis (RT-PCR).
- Malassezia pachydermatis and other Malassezia species - Antifungal Suceptibility tests.
- Malignant Catarrhal Fever; see Bovine Herpesvirus (Malignant Catarrhal fever).
- Marek Disease Virus (dsDNA, Alphaherpesvirinae, Mardivirus, Gallid Herpesvirus 2 -GalHV-2): Molecular diagnosis (PCR).
- Marteilia refringens: Molecular detection (PCR).
- Meat: Animal meat species - Detection and animal species identification in meat food or animal feed - Molecular methods (PCR and sequencing).
- Meat sex, Bovine meat sex - Molecular testing.
- Melisococcus plutonius (European foulbrood -Loque-of honey bees -Apis Mellifera-): Molecular diagnosis (PCR).
- Melissococcus plutonius: Molecular diagnosis (PCR).
- Mesocestoides spp.: Molecular diagnosis (PCR).
- Methicillin-Resistant Staphylococcus aureus (MRSA) in meat products: Culture; Molecular detection of MRSA; Molecular typing SCCmec, ST (MLST) and spa.
- Microsporidia spp. - Molecular diagnosis (PCR).
- Mitosporidium daphniae: Molecular diagnosis (PCR).
- Monkey Poxvirus (MPXV): see Poxvirus of animals.
- Monocercomonoides spp.: Molecular diagnosis (PCR); Species molecular identification (sequencing).
- Morbillivirus (Canine distemper virus -CDV) - (see Distemper virus).
- Murine Norovirus.
- Murine Parvovirus (Minute virus of mice -MVM-): Molecular diagnosis (PCR).
- Mycobacterium avium subsp. hominissuis – Culture; Molecular diagnosis (PCR).
- Mycobacterium avium subsp. paratuberculosis -MAP- (Johne´s disease).
- Mycobacterium chelonae (Salmonids).
- Mycobacterium genavense: Molecular diagnosis (PCR).
- Mycobacterium spp. (Any species).
- Mycoplasma agalactiae and group Mycoplasma mycoides - Molecular diagnosis (PCR); Molecular identification.
- Mycoplasma agalactiae (Contagious agalactia) - Molecular diagnosis (PCR).
- Mycoplasma bovis - Molecular diagnosis (PCR).
- Mycoplasma capricolum subsp. capripneumoniae (Contagious Caprine Pleuropneumonia –CCP-) - Molecular diagnosis (PCR).
- Mycoplasma felis (Mycoplasma haemophelis): Molecular diagnosis (PCR).
- Mycoplasma gallisepticum (Chronic Respiratory disease of poultry; Avian Infectious sinusitis) - Molecular diagnosis (PCR).
- Mycoplasma gallisepticum: see Avian Mycoplasmosis (Mycoplasma gallisepticum, Mycoplasma synoviae, Mycoplasma iowae).
- Mycoplasma goodi.
- Mycoplasma haemofelis (Feline infectious anemia; Feline Hemotropic mycoplasmosis) - Molecular diagnosis (PCR).
- Mycoplasma haemolamae - Molecular diagnosis (PCR).
- Mycoplasma haemominutum (Feline Infectious anemia): Molecular diagnosis (PCR).
- Mycoplasma hyopneumoniae (Porcine enzootic pneumonia) - Molecular diagnosis (PCR).
- Mycoplasma hyorhinis - Molecular diagnosis (PCR).
- Mycoplasma iowae . (see Avian mycoplasmosis).
- Mycoplasma mycoides - (see Mycoplasma agalactiae and group Mycoplasma mycoides.
- Mycoplasma mycoides subsp. mycoides biotype LC (Large colonies) - (see Mycoplasma agalactiae and group Mycoplasma mycoides).
- Mycoplasma mycoides subsp. mycoides biotype SC (Small colonies) - (see Mycoplasma agalactiae and Mycoplasma mycoides group).
- Mycoplasma putrefaciens - (see Mycoplasma agalactiae and Mycoplasma mycoides group).-
- Mycoplasma synoviae - (see Avian mycoplasmosis).
-
Mycotoxins - Mycotoxicosis-Fungi producers in digestive tract samples of animals, grains, feed, plants, soil, ..., (Ergotism
, Aflatoxins, Trichothecenes, Fuminosins, Zearalenone, Ocratoxins>: Fungal cultures; Molecular diag - Myxobolus cerebralis (Salmonidae; Rainbow trout: Oncorhynchus)
- Myxoma virus (MYXV) (Myxomatosis) (Poxviridae, Chordopoxvirinae, Leporipoxvirus) - Molecular diagnosis (PCR).
- Myxomatosis (Leporipoxvirus) - (see Myxoma virus).
- Tetracapsuloides bryosalmonae, Myxozoan (Proliferative Kidney Disease, Salmo salar -Atlantic Salmon-).
- Naegleria spp. in freshwater or lesions from animals: Molecular diagnosis (PCR); Species Molecular identification (sequencing).
- Nairobi sheep disease virus (NSDV) (= Ganjam virus) (-ssRNA -3 parts: small -S-, medium -M-, large -L-, Bunyavirales, Nairoviridae, Orthonairovirus): Molecular diagnosis (RT-PCR).
- Neoparamoeba pemaguidensis (Amoebic Gill Disease, -Salmonids-).
- Neorickettsia risticii (before Ehrlichia risticii) (see Ehrlichia risticii).
- Neorickettsia spp.: Molecular diagnosis (PCR); Species molecular identification (sequencing).
- Neosporosis (Neospora caninum) - Microscopic exam and molecular diagnosis (PCR).
- Neospora hughesi (Protozoan equine meningoencephalitis): Molecular diagnosis (PCR).
- Nervous Necrosis - (see Viral Nervous Necrosis -VNN-).
- Nervous Necrosis Virus (NNV) - (see Viral Nervous Necrosis).
- Newcastle Disease virus (Avian Paramyxovirus type 1) - Molecular diagnosis (RT-PCR).
- Nodavirus - Molecular diagnosis (RT-PCR) - Molecular diagnosis.
- Nodular Contagious Dermatitis (Lumpy Skin Disease) (dsDNA, Poxviridae, Capripoxvirus) - Molecular diagnosis (PCR).
- Nosema spp., Nosema apis, Nosema bombi, Nosema ceranae: Molecular diagnosis (PCR).
- Orf virus (ORFV) (Ovine Parapoxvirus) - Molecular diagnosis (PCR).
- Ostreid Herpesvirus 1: Molecular diagnosis (PCR).
- Ovine Adenovirus (Mastadenovirus and Atadenovirus): Molecular diagnosis (PCR).
- Ovine Herpesvirus type 2 (Ovine Gammaherpesvirus 2) (dsDNA, Herpesviridae): Molecular diagnosis (PCR).
- Ovine Papilloma types 1, 2 and 3 (dsDNA, Papillomaviridae) - Molecular diagnosis (PCR).
- Ovine Papillomavirus: Molecular diagnosis (PCR).
- Ovine Pulmonary Adenomatosis (Jaagsiekte Sheep Retrovirus -JRSV-) (Retroviridae, Betaretrovirus): Molecular diagnosis (RT-PCR).
- Ovine Respiratory Syncitial virus (-ssRNA, Pneumoviridae, Orthopneumovirus): Molecular diagnosis (RT-PCR).
-
Pacheco´s Parrot Disease
Herpesviridae, Iltovirus, Psittacid alphaherpesvirus 1 to 4 (PsHV-1 to 4)> : Molecular diagnosis (PCR). - Paenibacillus spp.: Qualitative or quantitative culture; Molecular diagnosis (PCR); Species molecular identification (sequencing).
- Pancreatic disease (PD) (Altlantic Salmon, Salmo salar).
- Parainfluenza 5 (Simian virus 5) (-ssRNA, Paramyxoviridae, Respirovirus -types 1 and 3-, Rubulavirus -types 2 and 4-): Molecular diagnosis (RT-PCR).
- Parainfluenza virus - Molecular diagnosis (RT-PCR).
- Paravaccinia (Pseudocowpox virus) - (see Poxvirus transmitted by animals).
- Partridges and other related birds: Infection in the red-legged partridge, grey and chukar partridges, phaisans and other related gamebirds - Microbiological diagnosis
- Parvicapsula minibicornis (Oncorhynchus tshawytscha).
- Pasteurella multocida and other Pasteurella spp.
- Penaeus vannamei Nodavirus (PvNV) (Nodaviridae; Nodavirus) in crustaceans: Molecular diagnosis (RT-PCR).
- Peste des Petits Ruminants virus (PPRV, Ovine Rinderpest) (-ssRNA, Mononegavirales, Paramyxoviridae, Morbillivirus, Small ruminant morbillivirus): Molecular diagnosis (RT-PCR).
- Photobacterium damselae subsp. piscicida and Photobacterium damsela subsp. damselae - Fish Pasteurellosis (Photobacteriosis): Molecular diagnosis (PCR).
- Photobacterium phosphoreum - fish spoilage bacteria: Culture; Molecular diagnosis (PCR).
- Pig erysipela - (see Erysipelothrix rhusiopathiae in the Clinical Microbiology Area).
- Piscirickettsia salmonis.
- Plasmodium berghei: Molecular diagnosis (PCR).
- Plasmodium gallinaceum – Molecular diagnosis (PCR).
- Plasmodium knowlesi - Microscopic exam; Molecular diagnosis (PCR).
- Plesiomonas shigelloides – Culture; identification; Molecular diagnosis (PCR).
- Pneumonia virus of mice -PVM-; Mouse Pneumonia virus -MPV- (Family Paramyxoviridae, Genus Pneumovirus, (-)ssRNA): Molecular diagnosis (RT-PCR).
- Pneumovirus (Avian Pneumovirus -APV-; Bovine respiratory syncitial virus -BRSV-; Pneumonia virus of mice -PVM-) - Molecular diagnosis (RT-PCR).
- Porcine Adenovirus (PAV) (dsDNA, Adenoviridae): Molecular diagnosis (PCR).
- Porcine Circovirus (ssDNA, Circoviridae, Circovirus) - Molecular diagnosis (PCR).
- Porcine Cytomegalovirus (PCMV) (syn. Porcine Herpesvirus type 2) (Suid Herpesvirus type 2 -SuHV-2) (dsDNA, Herpesviridae): Molecular diagnosis (PCR).
- Porcine dysentery - (see Serpulina hyodysenteriae).
- Porcine Encephalomyocarditis virus (Picornaviridae, Cardiovirus) - Molecular diagnosis (RT-PCR).
- Porcine Enterovirus, Groups I, II and III: Molecular diagnosis (RT-PCR).
- Porcine intestinal adenomatosis (IA) - (see Lawsonia intracellularis).
- Porcine Parvovirus (PPV) (ssDNA, Paroviridae, Parvovirinae, Protoparvovirus):- Molecular diagnosis (PCR).
- Porcine proliferative enteropathy (PPE) - (see Lawsonia intracellularis).
- Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) - Molecular diagnosis (RT-PCR).
- Porcine Reproductive Respiratory Syndrome virus (PRRS virus) (Arteriviridae, Arterivirus): Molecular diagnosis (RT-PCR).
- Porcine Rotavirus A, B and C (dsRNA, Reoviridae, Seudoreovirinae, Rotavirus): Molecular diagnosis (RT-PCR).
- Porcine Torovirus - Molecular diagnosis (RT-PCR).
- Porcine Torque Teno Virus (TTV) - Molecular diagnosis (PCR).
- Poxvirus from animals - Orthopoxvirus (Cowpox -CPXV-, Vaccinia -VACV-, Monkeypox -MPXV-); Parapoxvirus (Orf virus -ORFV-, Bovine Vesicular Stomatitis -BVSV-, Pseudocowpox virus -Paravaccinia-PCPV-, Parapoxvirus of Red Deer in New Z
- Proliferative Hemorrhagic Enteropathy (PHE) - (see Lawsonia intracellularis I>).
- Proliferative Kidney Disease (PKD) of fishes (Sphaerospora oncorhynci): Molecular diagnosis (PCR).
- Propionibacterium spp. (Propionic bacteria) in cheese: Molecular diagnosis (PCR).
- Prototheca spp.: Interest in human and animal pathology and in enviromental contamination sources (environmental samples, foods and animal samples): Culture; Molecular identification(PCR and sequencing) - (see in the Water Microbiology A
- Proventricular Dilatation Disease (PDD) (-ssRNA, Bornaviridae, Orthobornavirus, Parrot Bornavirus 1 (PaBV-1), 2 (PaBV-2), 3 (PaBV-3), 4 (PaBV-4), 7 (PaBV-7): Molecular diagnosis (RT-PCR).
- Pseudocowpox virus (PCPV) - (see Poxvirus transmitted by animals).
- Pseudomonas anguilliseptica (Sparus aurata).
- Psittaccine Beaker Feather disease (PBFD) (ssDNA, Circoviridae, Circovirus): Molecular diagnosis (PCR).
- Psittacid Alphaherpesvirus 1-4 (PsHV 1-4): Molecular diagnosis (PCR).
- Psittacid Alphaherpesvirus 1 - 4 (PsHv-1-4) (Pacheco´s Parrot Disease (PPD) (dsDNA, Herpesviridae, Iltovirus): Molecular diagnosis (PCR).
- Psychrophiles Clostridia in meat products (Clostridium estertheticum and Clostridium gasigenes): Culture; Molecular diagnosis (PCR).
- Pustule - (see by species of animals affected).
- Rabbit Enteric Coronavirus (Coronaviridae) - Molecular diagnosis (RT-PCR).
- Rabbit Kidney Vacuolating agent (RKVA) (Polyomavirus): Molecular diagnosis (PCR).
- Rabbit kidney Vacuolating virus (RKV) (Polyomavirus) - Molecular diagnosis (PCR).
- Rabbit myxoma virus - (see Myxoma virus).
- Rabbit Parvovirus (previously Rabbit Haemorrhagic virus) (ssDNA, Parvoviridae, Bocaparvovirus): Molecular diagnosis (PCR).
- Rabbit Poxvirus: see Poxvirus of animals.
- Rabbit Rotavirus: Molecular diagnosis (RT-PCR).
- Rabbit Shope Fibroma virus –SFV-) (Poxviridae, Chordopoxvirinae, Leporipoxvirus): Molecular diagnosis (PCR).
- Rabbitt Hemorrhagic Disease virus (RHDV) (Caliciviridae, Lagovirus - Molecular diagnosis (RT-PCR).
- Rabies virus (See Rabies tests in the Rabies tests specific area).
- Redspotted Grouper Nervous Necrosis Virus (RGNNV): see Viral Nervous Necrosis (VNN).
- Renibacterium salmoninarum (Oncorhynchus mykiss, Rainbow trout -; Oncorhynchus tshawytscha Bacterial kidney disease).
- Reovirus type 3 (Family Reoviridae, Subfamily Spinareovirinae, dsRNA: Molecular diagnosis (RT-PCR).
- Respiratory and intestinal Coronavirus.
- Rhinosporidium seeberi (Rhinosporidiosis): Molecular diagnosis (PCR).
- Rhodococcus equi: Molecular diagnosis (PCR).
- Riccardoella limacum - (see Snails, Acariosis, Heliciculture, Parasitic pathology in Snails Riccardoella limacum - Microscopic exam).
- Rickettsia spp.: Molecular diagnosis (PCR); Species molecular identification (sequencing).
- Rift Valley Fever virus (+/-ssRNA ambisense, -ssRNA segments L y M, +/-ssRNA segment S, Bunyavirales, Phenuiviridae, Phlebovirus): Molecular diagnosis (RT-PCR).
- Rinderpest (-ssRNA, Paramixoviridae, Morbillivirus, Species Rinderpest Morbillivirus): Molecular diagnosis (RT-PCR).
- Rinderpest virus (RPV) - Molecular diagnosis (RT-PCR).
- River Ross virus (Togaviridae, Alphavirus) - Molecular diagnosis (RT-PCR).
- Rotavirus (Reoviridae, Rotavirus) - Molecular diagnosis (RT-PCR).
- Sacbrood virus (SBV): Molecular diagnosis (RT-PCR).
- Salmonella enterica subsp enterica serov. pullorum: Culture; Molecular diagnosis (PCR); Antibodies to antigens O and H; Molecular comparison of strains.
- Salmonid alphavirus (SAV), SAV1 and SAV3 subtypes (Salmo salar).
- Saprolegnia spp., (S. parasitica, S. salmonis, S. ferax, S. diclina, S. delica) (Oomycota, Saprolegniales, Saprolegniaceae, Saprolegnia): Molecular diagnosis (PCR).
- Sarcocystis tenella - Microscopic exam; Molecular diagnosis (PCR).
- SARS Coronavirus: Molecular diagnosis (Real time RT-PCR).
- Schmallenberg virus (Arbovirus, Peribunyaviridae, Orthobunyavirus): Molecular diagnosis (RT-PCR).
- Screwworm - Cochliomyia hominivorax and Chrysomya bezziana larvae producing miasis: Microscopic exam; Molecular identification of species (PCR and sequencing).
- Sendai virus (SV) (Family Paramyxoviridae; Subfamily Paramyxovirinae; Genus Respirovirus; Group V ss(-)RNA): Molecular diagnosis (RT-PCR).
- Serpulina hyodysenteriae (Swine Dysentery): Molecular diagnosis (PCR).
- Sex determination in bovine meat - (see in the "Identification of Animal species in meat or fish products Area).
- Sheeppox and Goatpox (SPPV and GTPV) (Capripoxvirus): Molecular diagnosis (PCR).
- Shewanella putrefaciens (syn. Pseudomonas putrefaciens): Culture; Molecular diagnosis (PCR).
- Simian virus 5: see Parainfluenza 5.
- Sleeping Disease virus of salmonids.
- Snails-Acariosis-Helicicultura-parasitic pathology in snails. Riccardoella limacum - Microscopic exam.
- Snails – Infectious mycotic pathology by Aspergillus spp.: Quantitative culture; Identification.
- Snails – Infectious mycotic pathology by Fusarium spp.: Microscopic exam; Culture; Identification.
- Snails – Infectious mycotic pathology by Verticillium spp.: Microscopic exam; Identification.
- Snails – Infectious pathology by Pseudomonas spp.: Culture; Identification.
- Snails – Parasitic pathology by Nematodes: Microscopic exam; Identification.
- Sphaerothecum destruens - Molecular diagnosis (PCR); Molecular identification (sequencing).
- Spirometra erinacei, Spirometra mansonoides: Molecular diagnosis (PCR).
- Spironucleus muris (syn. Hexamita muris), Spironucleus barkhanus, Spironucleus meleagridis, Spironucleus salmonicida, Spironucleus salmonis, Spironucleus torosa, Spironucleus vortens: Molecular diagnosis (PCR).
- Staphylococcus pseudointermedius: Molecular diagnosis (PCR).
- Strawberry Coldwater Disease (Oncorhynchus mykiss - Rainbow trout -).
- Streptococcus agalactiae (group B) (Bovine mastitis) - Culture; Molecular diagnosis (PCR).
- Streptococcus dysgalactiae subsp. equisimilis - Culture; Molecular diagnosis (PCR).
- Swine Influenza virus.
- Surra - (see Trypanosoma evansi - Microscopic exam; Molecular diagnosis -PCR-)
- Swine erysipela - (see Erysipelothrix rhusiopathiae in the Clinical Microbiology Area).
- Swine Herpesvirus (Suid Alphaherrpevirus 1 - Pseudorabies; Suid betaherpesvirus 2 - Porcine Cytomegalovirus -PCMV.; Suid Gammaherpesvirus 3 = Porcine Lymphotropic Herpesvirus 1, 2 and 3 - PLHV-1; PLHV-2; PLHV-3): Molecular diagnosis (PCR).
- Swine Herpesvirus type 1 (Pseudorabies; Aujeszky disease) (Herpesviridae, Varicellovirus): Molecular diagnosis (PCR)
- Swine Herpesvirus type 2 (Porcine Cytomegalovirus -PCMV-): Molecular diagnosis (PCR).
- Swine Herpesvirus type 3 (Suid Gammaherpesvirus 3 = Porcine Lymphotropic Herpesvirus 1, 2 and 3 -PLHV-1; PLHV-2; PLHV-3): Molecular diagnosis (PCR).
- Swine Sapelovirus (PEV-8) (+ssRNA, Picornaviridae): Molecular diagnosis (RT-PCR).
- Swine Vesicular Disease (SVD) (Picornaviridae, Enterovirus) - Molecular diagnosis (RT-PCR).
- Taura Syndrome virus (TSV) (+ssRNA, Dicistroviridae, Aparavirus): Molecular diagnosis (RT-PCR).
- Taylorella equigenitalis (Contagious equine metritis -CEM-): Culture; Molecular diagnosis (PCR).
- Tenacibaculum maritimum (Fish Tenacibaculosis, syn. Flexibacteriosis): Molecular diagnosis (PCR).
- Theileria annulata (African and Mediterranean theileriosis) - Microscopic exam; Molecular diagnosis (PCR).
- Theileria equi (previously Babesia equi): Molecular diagnosis (PCR).
- Theileria orientalis - Microscopic exam; Molecular diagnosis (PCR).
- Theileria parva - Microscopic exam; Molecular diagnosis (PCR).
- African or Mediterranean Theileriosis - (see Theileria annulata).
- Thelaziosis - Thelazia callipaeda. Ocular parasitism in dogs and cats with risk of transmission to people: Microscopic exam; Molecular identification (sequencing).
- Tick-borne Encephalitis: see Flavivirus.
- Tick-borne encephalitis virus (TBEV) - (see Arbovirus in the Clinical Microbiology Area).
- Tick-borne Encephalitis virus (TBEV): Molecular diagnosis (RT-PCR).
- Toxigenic Clostridia in animal feed: Molecular diagnosis (PCR).
- Toxoplasma gondii in meat or meat products for consumption - Molecular detection (PCR) and mouse bioassay.
- Trichomonas fetus: Molecular diagnosis (PCR).
- Trichomonas gallinae - Molecular diagnosis (PCR).
- Tritrichomonas fetus (Bovine and feline Trichomonosis) - Microscopic exam; Molecular diagnosis (PCR).
- Trypanosoma evansi (Surra) - Microscopic exam; Experimental inoculation; Molecular diagnosis (PCR).
- Trypanosoma vivax - Microscopic exam; Molecular diagnosis (PCR).
- Tularemia - (see Francisella tularensis).
- Turkey Coronavirus.
- Turkey Coronavirus (+ssRNA): Molecular diagnosis (RT-PCR).
- Turkey hemorrhagic enteritis virus - Molecular diagnosis (PCR)..
- Turkey Herpesvirus (Meleagridis Herpesvirus, serotipo 3, Marek disease): Molecular diagnosis (PCR).
- Turkey Rhinotracheitis virus (Swollen Head Syndrome) (-ssRNA, Paramyxoviridae, Metapneumovirus, Avian Metapneumovirus): Molecular diagnosis (RT-PCR).
- Ureaplasma parvum - Molecular diagnosis (PCR).
- Usutu Virus - Molecular diagnosis (RT-PCR).
- Vaccinia virus (VACV) - (see Poxvirus transmitted by animals).
- Vesicular Stomatitis virus (>Rhabdoviridae, Vesiculovirus, serotypes New Jersey and Indiana): Molecular diagnosis (RT-PCR).
- Avian Paramyxovirus (APMV) (Avian Paramyxovirus type 1: Newcastle Disease virus -NDV-, Strains B1 (Hithner B1; Wester 2C; La Sota): Molecular diagnosis (RT-PCR).
- Vibrio anguillarum (fish vibriosis): Molecular diagnosis (PCR).
- Vibrio anguillarum - Vibriosis.
- Vibrio tapetis.
- Vibriosis (Vibrio anguillarum, V. fischeri, Aliivibrio salmonicida -syn. V. salmonicida-).
- Viral Encephalopathy and Retinopathy (VER) (Nodaviridae, Betanodavirus) - Molecular diagnosis (RT-PCR).
- Viral Epizootic Hemorrhagic Disease (EHDV) - Molecular diagnosis (RT-PCR).
- Viral Hemorrhagic Septicemia of fishes (Rhabdoviridae; Novirhabdovirus) - Molecular diagnosis (RT-PCR).
- Viral infections in Crustacea (shrimps, prawns and others)
- Viral Nervous Necrosis (VNN): Molecular diagnosis (RT-PCR).
- Viral Nervous Necrosis (VNN) - Molecular diagnosis (RT-PCR and sequencing).
- Wallemia sebi (xerophilic fungi): Molecular diagnosis (PCR).
- Wesselsbron virus (Arbovirus, +ssRNA, Flaviviridae, Flavivirus): Molecular diagnosis (RT-PCR).
- West Nile Fever virus - (see Arbovirus in the Clinical Microbiology Area).
- White Spot Syndrome virus (WSSV) (dsDNA, Nimaviridae, Whispovirus): Molecular diagnosis (PCR).
- White Tail Disease (WTD): Macrobranchium rosenbergii Nodavirus (MrNV) and Extra Small virus (XSV) - (see: Macrobranchium rosenbergii Nodavirus -MrNV-).
- Xenohaliotis californiensis: Molecular detection (PCR).
- Yellow Head virus (YHV) (+ssRNA, Roniviridae, Okavirus): Molecular diagnosis (RT-PCR).
- Yellow Head virus (YHV) (Yellow head) (+ssRNA, Roniviridae, Okavirus): Molecular diagnosis (RT-PCR).
- Yersinia enterocolitica - Culture; Molecular diagnosis (PCR); Molecular identification of pathogenic strains; Molecular identification of the main O serotypes.
- Yersinia ruckeri (Rainbow trout Enteric Red Mouth Disease): Molecular diagnosis (PCR).